Go Back   SEQanswers > Bioinformatics > Bioinformatics

Similar Threads
Thread Thread Starter Forum Replies Last Post
Alignment produces BAM file with sorted reads, but cannot see alignment alch Bioinformatics 11 04-14-2015 06:59 PM
Filtering a BAM by chastity flag using samtools danielsbrewer Bioinformatics 3 09-29-2011 02:58 AM
How to set a flag is mapped in sam/bam? fabrice Bioinformatics 1 08-24-2011 10:11 AM
BAM with inconsistent flag and mapq dariober Bioinformatics 2 07-18-2011 12:27 AM
mutiple mapped reads FLAG/TAG in bwa alignment data totalnew Bioinformatics 0 05-06-2011 11:21 AM

Thread Tools
Old 02-23-2018, 09:18 AM   #1
Junior Member
Location: Paris

Join Date: Dec 2017
Posts: 5
Default Alignment, bam with AM flag


I would like to use a program that requires bam files with AM flag (it's "the smallest template-independent mapping quality of segments in the rest"). Usually, I use bwa-mem, but this algorithm doesn't provide this flag. Do you know any algorithm that does ?

Thanks in advance !
Yexzm is offline   Reply With Quote

Thread Tools

Posting Rules
You may not post new threads
You may not post replies
You may not post attachments
You may not edit your posts

BB code is On
Smilies are On
[IMG] code is On
HTML code is Off

All times are GMT -8. The time now is 07:08 AM.

Powered by vBulletin® Version 3.8.9
Copyright ©2000 - 2020, vBulletin Solutions, Inc.
Single Sign On provided by vBSSO