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Old 02-23-2018, 09:18 AM   #1
Yexzm
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Location: Paris

Join Date: Dec 2017
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Default Alignment, bam with AM flag

Hi,

I would like to use a program that requires bam files with AM flag (it's "the smallest template-independent mapping quality of segments in the rest"). Usually, I use bwa-mem, but this algorithm doesn't provide this flag. Do you know any algorithm that does ?

Thanks in advance !
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