Hi, i'm new to chip-seq analysis
I'm using bowtie in ordor to align the sequences from the fastq format. My question is do I have to remove the short index sequences (ilumina hi seq) or does bowtie knows how to deal with them?
Thx!
I'm using bowtie in ordor to align the sequences from the fastq format. My question is do I have to remove the short index sequences (ilumina hi seq) or does bowtie knows how to deal with them?
Thx!
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