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Old 09-14-2011, 06:00 PM   #1
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Default RepeatMasker -lib option

When using the output of the RepeatModuler as the library for RepeatMasker with "-lib" option, was the customal library merely used or supplemented to RepBase for RepeatMasker?

Last edited by zwzhu; 09-14-2011 at 06:06 PM.
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Old 09-15-2011, 03:53 AM   #2
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If you supply a custom set of repeats for masking that is all that RepeatMasker will use. You can easily run RepeatMasker with and without this option and compare the results to see for yourself.
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