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Old 11-01-2019, 01:36 PM   #1
prashantwaiker92
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Location: North Carolina, USA

Join Date: Nov 2019
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Default VCF to RQTL format for genetic mapping?

Hi everyone,
I am new to this forum and bioinformatic methods. I have whole genome resequencing data for 180 haploid individual from same mother and have VCF file after variant calling. I am planning to perform a linkage mapping using RQTL/ASMap. Is there any tool to extract SNP information as an input for RQTL from VCF file?
Thanks a lot for any help.

- P
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illumina, linkage mapping, rqtl, snp, vcf

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