Hello,
I am trying to figure out the best way to find defined sequences within the 6 fasta-files from CCS sequencing with 2 cells on PacBio RSII.
What I would like to do is find exact (and similar matches!) of a given sequence (50-60 bp) within all sequences I got from sequencing. Importantly, I want to do the search in two directions (5'-3'; 3'-5').
I tried to read and understand the BLAST+ manual, but I am not into informatics and wonder whether there is a more convenient way (with a graphic user interface?) for me to do so... I am using MacOS X 10.7.5.
Your help would be greatly appreciated.
Thank you very much,
Chris
I am trying to figure out the best way to find defined sequences within the 6 fasta-files from CCS sequencing with 2 cells on PacBio RSII.
What I would like to do is find exact (and similar matches!) of a given sequence (50-60 bp) within all sequences I got from sequencing. Importantly, I want to do the search in two directions (5'-3'; 3'-5').
I tried to read and understand the BLAST+ manual, but I am not into informatics and wonder whether there is a more convenient way (with a graphic user interface?) for me to do so... I am using MacOS X 10.7.5.
Your help would be greatly appreciated.
Thank you very much,
Chris
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