Hello ChiP Seq experts,
1. BWA vs Novoalign, which one is better aligner for ChiP-Seq Application (illumina seq) ?
2. I aligned illumina sequences (100 bp, Single-end reads) with BWA and novoalign (defaul options), bwa yielded 10% more reads mapped than novoalign. Does bwa more specific ? better aligner?
Thanks,
Ng
1. BWA vs Novoalign, which one is better aligner for ChiP-Seq Application (illumina seq) ?
2. I aligned illumina sequences (100 bp, Single-end reads) with BWA and novoalign (defaul options), bwa yielded 10% more reads mapped than novoalign. Does bwa more specific ? better aligner?
Thanks,
Ng