Hi all,
I am studying SNVs from Illumina paired-end data. I was wondering if I could make an overlap between my identified SNVs and the SNPs that are already known. In order to do that, I would need a BED-formate with the (at least) 4 columns:
Chr
Position (zero-based)
Position (one-based)
SNIP ID (rs-name).
I already looked at the UCSC and the NCBI website and I find there the SNPs in different files, per chromosome, but with a lot of additional information. Is there some shortcut to obtain the data I want, or do I need to download each file separately, then merge them, and then delete all the information I'm not interested in ?
Thanks a lot!
Lien
I am studying SNVs from Illumina paired-end data. I was wondering if I could make an overlap between my identified SNVs and the SNPs that are already known. In order to do that, I would need a BED-formate with the (at least) 4 columns:
Chr
Position (zero-based)
Position (one-based)
SNIP ID (rs-name).
I already looked at the UCSC and the NCBI website and I find there the SNPs in different files, per chromosome, but with a lot of additional information. Is there some shortcut to obtain the data I want, or do I need to download each file separately, then merge them, and then delete all the information I'm not interested in ?
Thanks a lot!
Lien
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