Hi,
Regarding the paper "Instructions for scaffolding MIRA 454 contigs & 25 KB paired-end data with BAMBUS", I would like to ask some comments about the section "Create Scaffold Fasta File".
Based on the command below:
printScaff -e non_O157_bambus.evidence.xml -s non_O157_bambus.out.xml -l
non_O157_bambus.lib -f non_0157_out.unpadded.fasta -merge -o
non_O157_bambus_scaffold -page -dot
Can I know how to create the non_0157_out.unpadded.fasta? Or this file refer what?
I got read the this website
But still quite confusing about the way to create the non_0157_out.unpadded.fasta -merge.
Actually based on the command above, non_0157_out.unpadded.fasta is the input or output file?
How to obtain the non_0157_out.unpadded.fasta file below I running the printScaff command.
Thanks a lot for all of your advice.
Regarding the paper "Instructions for scaffolding MIRA 454 contigs & 25 KB paired-end data with BAMBUS", I would like to ask some comments about the section "Create Scaffold Fasta File".
Based on the command below:
printScaff -e non_O157_bambus.evidence.xml -s non_O157_bambus.out.xml -l
non_O157_bambus.lib -f non_0157_out.unpadded.fasta -merge -o
non_O157_bambus_scaffold -page -dot
Can I know how to create the non_0157_out.unpadded.fasta? Or this file refer what?
I got read the this website
But still quite confusing about the way to create the non_0157_out.unpadded.fasta -merge.
Actually based on the command above, non_0157_out.unpadded.fasta is the input or output file?
How to obtain the non_0157_out.unpadded.fasta file below I running the printScaff command.
Thanks a lot for all of your advice.