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Old 06-13-2011, 11:43 AM   #1
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Join Date: Jun 2011
Posts: 18
Question SRA archive

Hi all,

I have a question regarding experiments in SRA archive. The experiment of my interest has 2 replicates in it.

I downloaded all of them in a single fastq file by selecting all the runs. The resulting fastq file has combined number of reads of all the replicates. I am planning to do the alignment and peak calling with this single file that has all the reads of replicates.

I was wondering if this is any different from downloading each replicate separately and performing the analysis.

Last edited by anagari; 06-13-2011 at 12:00 PM.
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