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Old 06-27-2011, 01:49 AM   #1
mfasold
Junior Member
 
Location: Leipzig, Germany

Join Date: Jun 2011
Posts: 1
Default Introducing DARIO, a web service for the analysis of small RNA-seq data

Hi,

we would like to point the community to a web tool we have recently developed.

DARIO is a web service for the analysis of short RNAs from high throughput sequencing data. It features
  • fast and convenient analysis of small RNA-seq data (short RNA-seq protocol)
  • no dependencies to any sequencing platform or mapping tool (convert from common SAM format)
  • differential expression: direct comparison of expressions from several DARIO runs due to RPM normalization
  • upload of own annotations or regions of interest
  • prediction of new putative ncRNAs using a machine learning approach
  • additional validation of predicted ncRNAs using RNAz

Files can be uploaded in BED or BAM format. The website currently supports seven assemblies of six species: human (hg18, hg19), rhesus monkey (rheMac2), mouse (mm9), fruit fly (dm3), worm (ce6) and zebrafish (danRer6).

Any comments and suggestions appreciated.

URL: http://dario.bioinf.uni-leipzig.de/
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