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Old 04-10-2012, 11:24 PM   #1
Location: Ospedali Riuniti di Bergamo, ITALY

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Posts: 99
Default RNASeq

anyone could help me to "understand" the outputs of cufflinks?
How can I use these data and FPKM values to extract the differential gene expression and the different abundance of isoforms?

Moreover, where can I find a gtf annotation file for human to integrate in the run of cufflinks as -g parameter?

thanks a lot
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Old 04-11-2012, 12:33 AM   #2
Location: Munich, Germany

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There's a verbose description of each column under

Also, in my experience, for a lot of technical questions and concerns the FAQ is helpful,
mixter is offline   Reply With Quote

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