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Old 06-10-2015, 01:38 AM   #1
Medhat
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Location: Poland

Join Date: Jun 2013
Posts: 37
Exclamation "buffer overflow detected" when using SInC simulator

I am using SInC simulator , command is;

./SInC_simulate -S 0.002 -I 0.0001 -p 0 /data/genome.fa > ./illumina_read

It gives ;
*** buffer overflow detected ***: ./SInC_simulate terminated
======= Backtrace: =========
/lib/x86_64-linux-gnu/libc.so.6(__fortify_fail+0x37)[0x7fbfdd8c10e7]
/lib/x86_64-linux-gnu/libc.so.6(+0xeefa0)[0x7fbfdd8bffa0]
/lib/x86_64-linux-gnu/libc.so.6(+0xee3f9)[0x7fbfdd8bf3f9]
/lib/x86_64-linux-gnu/libc.so.6(_IO_default_xsputn+0x85)[0x7fbfdd845325]
/lib/x86_64-linux-gnu/libc.so.6(_IO_vfprintf+0x1b12)[0x7fbfdd815e82]
/lib/x86_64-linux-gnu/libc.so.6(__vsprintf_chk+0x9d)[0x7fbfdd8bf49d]
/lib/x86_64-linux-gnu/libc.so.6(__sprintf_chk+0x7f)[0x7fbfdd8bf3df]
./SInC_simulate[0x405b71]
./SInC_simulate[0x401423]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xfd)[0x7fbfdd7efead]
./SInC_simulate[0x40180d]
any idea?

Thanks

UPDATE

solution can be found here

Last edited by Medhat; 06-10-2015 at 02:33 AM.
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