SEQanswers

Go Back   SEQanswers > Sequencing Technologies/Companies > Vendor Forum



Similar Threads
Thread Thread Starter Forum Replies Last Post
Avadis NGS vs CLC Genomics? Novice Bioinformatics 34 08-22-2016 11:15 PM
Avadis NGS 1.3 Release Announcement Strand SI Vendor Forum 0 02-08-2012 12:00 AM
Avadis NGS webinars in July! Strand SI Events / Conferences 0 07-11-2011 12:46 AM
New Avadis NGS Webinar topics available in June! Strand SI Events / Conferences 0 06-01-2011 03:24 AM
Strand SI introduces Avadis NGS. NGS analysis for the rest of us! Strand SI Vendor Forum 0 02-14-2011 10:19 AM

Reply
 
Thread Tools
Old 04-12-2011, 12:50 AM   #1
Strand SI
The Avadis NGS Team
 
Location: All over the World

Join Date: Feb 2011
Posts: 26
Default Avadis NGS version 1.2 available now!

Version 1.2 incorporates new features, some bug fixes, and several enhancements, most importantly the following:
  • Differential SNP analysis has been added to the RNA-Seq and DNA-Seq workflows to identify the SNP locations in a pair of samples (such as in matched tumor-normal) that exhibit differential behavior.
  • Insertions discovered during SNP detection are now annotated with a decibel score.
  • Aligned sequence data generated by the PacBio and Ion Torrent platforms can now be imported into Avadis NGS, in addition to the Illumina, SOLiD, and 454 platforms.
  • Import option for continuous data in the wiggle .WIG file format, allowing users to import and visualize data including GC percentage and conservation scores. These tracks have been added to the human annotation data (h18 and hg19 builds) and will be added to the annotations for organisms currently supported by Avadis NGS. Annotations can be updated through the Annotations Manager.
  • The novel gene detection algorithm has been enhanced to make better use of spliced and paired reads. Novel partition predictions are now annotated with conservation scores derived from the conservation continuous data track.
  • The novel gene detection algorithm has been enhanced to make better use of spliced and paired reads. Novel partition predictions are now annotated with conservation scores derived from the conservation continuous data track.
  • Improvements to the determination of length of translocations and zygosity of structural variants (SV) as part of the SV Detection analysis step in the DNA-Seq workflow.
  • Region lists can now be imported from TSV files and region lists of any size are now supported by all operations.
  • The first six scripts in our online Scripts Library can now be accessed directly from the application.

The full list of enhancements, bug fixes and know issues is available here or through the Help Menu in Avadis NGS.

All current users of version 1.1.1 will be automatically prompted for a product update the next time Avadis NGS is launched.

To evaluate this new version request a trial on our website, then go to the Download Installers section and select the appropriate installer for your operating system. For guidance on software installation and activation there are a number of online guides available on our website or you can contact our support team.

The Avadis NGS Team

Last edited by Strand SI; 04-17-2011 at 10:31 PM.
Strand SI is offline   Reply With Quote
Reply

Thread Tools

Posting Rules
You may not post new threads
You may not post replies
You may not post attachments
You may not edit your posts

BB code is On
Smilies are On
[IMG] code is On
HTML code is Off




All times are GMT -8. The time now is 03:24 AM.


Powered by vBulletin® Version 3.8.9
Copyright ©2000 - 2020, vBulletin Solutions, Inc.
Single Sign On provided by vBSSO