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Old 05-24-2011, 11:07 PM   #1
rafi bondi
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Location: israel

Join Date: Nov 2010
Posts: 9
Default filter sam results

hi,
I've used bwa to map a pair dent fastq files to a small part of the genome (5000 bp), but i get a very big SAM file (2.5Gb). Is there a way to remove from the sam file the parts that weren't aligned?
do i have to use the location of the gene in the genome?
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