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Old 08-21-2013, 01:54 PM   #1
jflowers002
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Location: Seattle

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Default Orthomcl problems

I am trying to run Orthomcl, but when I try the first step to load the blast results into mysql (orthomclLoadBlast), I get the following error:

DBD::mysql::st execute failed: Table 'orthomcl.similarsequences' doesn't exist.

I am not sure what to do.

Thanks!
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Old 08-21-2013, 03:08 PM   #2
GenoMax
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Did you follow the directions in the user guide to install/configure program/database etc?

The error above seems to indicate that you either did not create that table or called it something else.
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Old 08-26-2013, 06:14 AM   #3
jflowers002
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Default Solved

Thanks for the reply. I forgot to re-run the InstallSchema script after having to uninstall and then re-install Mysql to deal with issues with that installation.

Thanks again!
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Old 07-22-2014, 06:54 AM   #4
impessa
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Hi
Somebody can said me how to process the output file of OrthoMCL to draw the venn diagrams ?

Thanks !!
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