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Old 09-01-2014, 05:01 AM   #1
Location: US

Join Date: May 2012
Posts: 80
Lightbulb running CEGMA VM

I used CEGMA VM on windows 7 Operating system. I used virtual box for VM and followed steps as in:

CEGMA did run successfully, but it does not produce the completeness report, I paste below the last commands from CEGMA


evaluating results and comaring to set of 248 highly conserved CEGS

running:completness local_self.hmm_select.aln /opt/CEGMA_v2.5/data/completeness_cutoff.tbl>output.completeness_report
use of uninitialized value in division (/) at /opt/CEGMA_v2.5/bin/completeness line 252


I understand some error in perl code ( of CEGMA. How to fix this?. Does intializing the value fix the this issue?

Any suggestion.
bioman1 is offline   Reply With Quote
Old 09-08-2014, 07:43 AM   #2
Location: Davis, CA

Join Date: May 2011
Posts: 53

Did you run CEGMA on your own data, or with the supplied sample data? Try the sample data first.
kbradnam is offline   Reply With Quote

annotation, cegma, coregenes

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