SEQanswers

Go Back   SEQanswers > Bioinformatics > Bioinformatics



Similar Threads
Thread Thread Starter Forum Replies Last Post
Doubt for PDB and chains bio_informatics General 3 10-28-2014 07:35 AM
Download fasta file for pdb id from uniprot bio_informatics Bioinformatics 5 09-12-2014 06:39 AM
Multiple chains in fasta file from PDB bio_informatics General 0 09-08-2014 02:14 PM
Analyzing fasta files: BioPython medinab Bioinformatics 1 07-07-2014 04:31 AM
pdb files for c. elegans bio_informatics Literature Watch 1 03-18-2014 03:03 AM

Reply
 
Thread Tools
Old 01-13-2015, 10:35 AM   #1
fafnir1990
Junior Member
 
Location: Poland

Join Date: Oct 2014
Posts: 7
Default Biopython pdb.DSSP fasta

Hi everyone!
I`ve a trouble with run DSSP module with protein in fasta format. Is it possible to run DSSP from biopython interface with sequence without pdb file?

Thanks for any help!
fafnir1990 is offline   Reply With Quote
Old 01-13-2015, 05:23 PM   #2
maubp
Peter (Biopython etc)
 
Location: Dundee, Scotland, UK

Join Date: Jul 2009
Posts: 1,543
Default

I don't know - you might have more success asking directly on the biopython mailing list?
http://mailman.open-bio.org/mailman/listinfo/biopython
maubp is offline   Reply With Quote
Old 01-13-2015, 10:04 PM   #3
fafnir1990
Junior Member
 
Location: Poland

Join Date: Oct 2014
Posts: 7
Default

Ok, thanks
fafnir1990 is offline   Reply With Quote
Reply

Tags
biopython, dssp, fasta format, protein, secondary structure

Thread Tools

Posting Rules
You may not post new threads
You may not post replies
You may not post attachments
You may not edit your posts

BB code is On
Smilies are On
[IMG] code is On
HTML code is Off




All times are GMT -8. The time now is 02:21 AM.


Powered by vBulletin® Version 3.8.9
Copyright ©2000 - 2020, vBulletin Solutions, Inc.
Single Sign On provided by vBSSO