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Old 02-20-2011, 08:22 PM   #1
biofqzhao
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Location: Penn State

Join Date: Jan 2009
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Default inGAP-sv: a new tool to identify and visualize structural variations

We have developed a tool to identify and visualize structural variations (SVs) from paired-end mapping data.

It has a few advantages compared with other similar tools.
1. It can detect large insertions and complex SVs.
2. It employs a new scoring system to evaluate the quality of predicted SVs.
3. It can distinguish heterozygous and homozygous SVs.
4. It can effectively filter false positives, particularly those associated with tandem repeats.
5. It provides a user-friendly graphic interface to detect, verify, annotate, and manually edit SVs.

The tool can be downloaded from http://ingap.sourceforge.net/
A quick manual can be accessed at http://schuster-33.bx.psu.edu/shared/manual.pdf
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