SEQanswers

Go Back   SEQanswers > Literature Watch



Similar Threads
Thread Thread Starter Forum Replies Last Post
How to make HiSeq indexed paired-end library with homemade oligos? ostrakon Illumina/Solexa 6 03-16-2012 05:22 AM
Oligos on the flowcell -- how'd they get there? MrGuy Illumina/Solexa 1 10-31-2011 11:57 AM
Zoom And SAM format seq777 Bioinformatics 1 05-11-2010 02:53 AM
zoom performance mchaisso Bioinformatics 0 06-16-2009 11:19 AM
Homemade illumina oligos and library prep kit elly Illumina/Solexa 3 03-24-2009 09:05 AM

Reply
 
Thread Tools
Old 08-08-2008, 06:02 AM   #1
Newsbot!
RSS Posting Maniac
 

Join Date: Feb 2008
Posts: 1,443
Default PubMed: ZOOM! Zillions Of Oligos Mapped.

Syndicated from PubMed RSS Feeds

ZOOM! Zillions Of Oligos Mapped.

Bioinformatics. 2008 Aug 6;

Authors: Lin H, Zhang Z, Zhang MQ, Ma B, Li M

MOTIVATION: The next generation sequencing technologies are generating billions of short reads daily. Resequencing and personalized medicine need much faster software to map these deep sequencing reads to a reference genome, to identify SNPs or rare transcripts. RESULTS: We present a framework for how full sensitivity mapping can be done in the most efficient way, via spaced seeds. Using the framework, we have developed software called ZOOM, which is able to map the Illumina/Solexa reads of 15X coverage of a human genome to the reference human genome in one CPU-day, allowing two mismatches, at full sensitivity. AVAILABILITY: ZOOM is freely available to non-commercial users at http://www.bioinfor.com/zoom CONTACT: hlin@bioinfor.com, zzhang@bioinfor.com, bma@csd.uwo.ca.

PMID: 18684737 [PubMed - as supplied by publisher]



More...
Newsbot! is offline   Reply With Quote
Old 08-11-2008, 02:09 PM   #2
myrna
Member
 
Location: Vancouver, Canada

Join Date: Feb 2008
Posts: 44
Default Dead link?

Has anyone been able to try this software? I am getting a 404 error from the link.
myrna is offline   Reply With Quote
Old 08-11-2008, 02:23 PM   #3
apfejes
Senior Member
 
Location: Oakland, California

Join Date: Feb 2008
Posts: 236
Default

We've been having a great conversation about it in another thread:

http://seqanswers.com/forums/showthr...=1240#post1240

It's not yet available, but should be shortly.

Anthony
__________________
The more you know, the more you know you don't know. —Aristotle
apfejes is offline   Reply With Quote
Old 08-21-2008, 07:52 AM   #4
Janine Voyer
Junior Member
 
Location: Waterloo, Ontario, Canada

Join Date: Aug 2008
Posts: 2
Default

I wanted to let everyone know that the ZOOM demo is now available. Please send me an email at janine@bioinfor.com to request a 30 day free demo.

Please also check out our benchmarks for ZOOM at: http://www.bioinformaticssolutions.c...benchmarks.php for Illumina/Solexa data. The benchmarks for ABI SOLiD data will be coming soon.
Janine Voyer is offline   Reply With Quote
Reply

Thread Tools

Posting Rules
You may not post new threads
You may not post replies
You may not post attachments
You may not edit your posts

BB code is On
Smilies are On
[IMG] code is On
HTML code is Off




All times are GMT -8. The time now is 12:26 AM.


Powered by vBulletin® Version 3.8.9
Copyright ©2000 - 2020, vBulletin Solutions, Inc.
Single Sign On provided by vBSSO