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Old 10-15-2018, 05:00 AM   #1
Location: China

Join Date: Dec 2009
Posts: 43
Default CLIP-seq database: PAR-CLIP, HITS-CLIP, iCLIP, eCLIP, irCLIP for RBP binding sites

Recent advances in high-throughput sequencing of immunoprecipitated RNAs after cross-linking (CLIP-Seq) provide powerful ways to identify biologically relevant miRNA-target and RNA-binding protein(RBP)–RNA interactions.

starBase v3.0 CLIP-seq database provides more than 700 CLIP-seq data from 203 RNA-binding proteins(RBPs). The CLIP technologies contains PAR-CLIP, HITS-CLIP, iCLIP, eCLIP, dCLIP, CLASH, CLEAR-CLIP, irCLIP,sCLIP, uvCLIP, etc.

starBase v3.0 is the first platform to visualize the binding motifs of RBPs by de novo analyzing the CLIP-seq data and provides genomic coordinates of identified RBPs binding motifs across different cell types, tissues and conditions.

All CLIP-seq datasets is freely available at

All RBP motifs is freely available at

rnaNGS is offline   Reply With Quote

eclip, hits-clip, iclip, irclip, par-clip

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