Hi all!
We're a relatively new core running Illumina's GAIIx and I'm trying to deal with the issue of data. Typically once the customers run finishes and if they want me to do the alignment I run it using maq/samtools (i prefer it over eland) and than give the customers the raw (qseq.txt) and aligned (bam) files.
In addition to all those files are others giving more? Do you typically also give the files in the run folder? Ie the Intensity/Matrix/Etc files? Currently we are doing this but it has become way too labor intensive because if you have more than 1 customer on a flow cell you have to manually go in and separate all those files by lane.
I'm just curious to see what other cores are doing as well.
At least we stopped saving images!
Thanks.
We're a relatively new core running Illumina's GAIIx and I'm trying to deal with the issue of data. Typically once the customers run finishes and if they want me to do the alignment I run it using maq/samtools (i prefer it over eland) and than give the customers the raw (qseq.txt) and aligned (bam) files.
In addition to all those files are others giving more? Do you typically also give the files in the run folder? Ie the Intensity/Matrix/Etc files? Currently we are doing this but it has become way too labor intensive because if you have more than 1 customer on a flow cell you have to manually go in and separate all those files by lane.
I'm just curious to see what other cores are doing as well.
At least we stopped saving images!
Thanks.
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