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  • Annotating the TCGA somatic mutations in maf format

    Hi,
    I would like to ask a general knowledge question.

    Is there a way of scoring the somatic mutations found in TCGA maf files.
    Or does it even make sense, will all those mutations make the top scores ?

    Annotation tools work on vcf files, is it possible to run them on maf files or do I need to write a script to change maf files to something those annotation tools can work on.

    Thanks

    Suleyman Vural

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