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Old 02-08-2011, 08:57 AM   #1
prm36
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Location: Edinburgh

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Default Coverage required to call SNPs from 454 data?

Hi,

I've mostly worked on Illumina data and have all my SNP calling scripts tuned to data from that platform.

I have recently received some 454 data and am wondering what is an appropriate minimum coverage cutoff to call a SNP at a given position.
Any help would be much appreciated.

Cheers

Paul
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