Tweet
I have a gtf file produced by Cuffmerge. The reference genome I used is UCSC mm10. According to the manual of cufflinks, the new genes are represented by class_code "u".
I want to add a cutoff for those new genes. The predicted new genes are at least 10 kb away from the other genes. I hope to get a gene_id list containing all genes and each gene should be at least 10 kb away from the other genes.
Can anyone tell me how to get the list?
Many thanks in advance!
I want to add a cutoff for those new genes. The predicted new genes are at least 10 kb away from the other genes. I hope to get a gene_id list containing all genes and each gene should be at least 10 kb away from the other genes.
Can anyone tell me how to get the list?
Many thanks in advance!