Go Back   SEQanswers > Applications Forums > De novo discovery

Similar Threads
Thread Thread Starter Forum Replies Last Post
Trinity and jellyfish problem jevcampe Bioinformatics 26 02-16-2017 10:03 AM
Trinity output illinu RNA Sequencing 0 11-13-2014 01:25 AM
problem in opening annovar output file in Varsifter genomics_search Bioinformatics 3 01-15-2013 04:15 AM
VarScan.v2.3.2 output file format problem SD2010Bioinfo Bioinformatics 7 11-20-2012 08:54 AM
MRNM problem for the .sam output file of tophat Gangcai Bioinformatics 4 08-13-2010 09:19 AM

Thread Tools
Old 11-27-2014, 03:27 AM   #1
Junior Member
Location: best

Join Date: Dec 2011
Posts: 9
Question Problem with trinity output file

I used trinity for de novo assembly of transciptome , Trinity.fasta file has ~141,000 sequences.And them seem to be a little short,

1-Is any further assembly step necessary??
I mean i must do additional assembly step for Trinity.fasta???
2-Could anyone please tell me about those tools?

Thanks in advance..,,
ahmadsam is offline   Reply With Quote

assembly, rna-seq, tgicl/cap3, trinity

Thread Tools

Posting Rules
You may not post new threads
You may not post replies
You may not post attachments
You may not edit your posts

BB code is On
Smilies are On
[IMG] code is On
HTML code is Off

All times are GMT -8. The time now is 03:08 AM.

Powered by vBulletin® Version 3.8.9
Copyright ©2000 - 2019, vBulletin Solutions, Inc.
Single Sign On provided by vBSSO