Hi,
When running bowtie with the command:
Hence on color space fastq file with the "--integer-quals" option, I am getting the error message:
any idea?
When running bowtie with the command:
bowtie -C -v 2 -m 1 -k 1 -p 12 --best --sam --integer-quals --un $unaligned --seed 1 /media/NAS1/Public/BowtieReferenceGenomes/hg19_c.ebwt/hg19_c -q $fastq > $outputfile
Saw negative Phred quality -478927729. terminate called after throwing an instance of 'int'
any idea?