Hi everyone!
Is anyone familiar with Haploview? If so, could you tell me whether it is possible to input fastPHASE output file formats into Haploview?
If not, I have my information in the following structure (unphased SNP matrix):
locus1 locus2 locus3 etc.
ind1 allele A G A T
ind1 allele B C G T
ind2 allele A G G A
ind2 allele B G G A
ind3 allele A C G C
ind3 allele B C A C
etc.
What would be the easiest way to input this SNP table into Haploview?
Thank you for help and any suggestions!
Is anyone familiar with Haploview? If so, could you tell me whether it is possible to input fastPHASE output file formats into Haploview?
If not, I have my information in the following structure (unphased SNP matrix):
locus1 locus2 locus3 etc.
ind1 allele A G A T
ind1 allele B C G T
ind2 allele A G G A
ind2 allele B G G A
ind3 allele A C G C
ind3 allele B C A C
etc.
What would be the easiest way to input this SNP table into Haploview?
Thank you for help and any suggestions!
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