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  • BioPerl version

    While trying to compile a script with specific Bioperl version dependency I encounter
    ! Couldn't find a $VERSION in prerequisite Bio::Perl
    I have set the PERL5LIB path to point to this latest version uner my .profile

    Please see below:
    perl -MBio::Perl -le 'print Bio::Perl->VERSION;'
    1.006924
    perldoc -l Bio::Perl
    /usr/local/share/perl/5.18.2/Bio/Perl.pm
    perl -V

    ........
    %ENV:
    PERL5LIB="/usr/local/share/perl/5.18.2/Bio/:\/usr/local/share/perl/site_perl/5.18.2/Bio:\/usr/local/share/perl/site_perl"
    @INC:
    /usr/local/share/perl/5.18.2/Bio/
    \/usr/local/share/perl/site_perl/5.18.2/Bio
    \/usr/local/share/perl/site_perl
    /etc/perl
    /usr/local/lib/perl/5.18.2
    /usr/local/share/perl/5.18.2
    /usr/lib/perl5
    /usr/share/perl5
    /usr/lib/perl/5.18
    /usr/share/perl/5.18
    /usr/local/lib/site_perl

    Any help on how I can install properly/set right path to version

  • #2
    it would be helpful if you posted the code where you are checking the version.

    also, it appears that

    print Bio::Perl->VERSION;

    is a method call, while

    print $Bio::Root::Version::VERSION;

    prints the contents of a variable containing the version value. I don't know if this could be causing the issues you're seeing.

    Comment

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