Hi all,
I am using tophat for an alignment. I would like to know how -N option and the other two options --read-gap-length and --read-edit-dist are related.
I gave -N 6 --read-edit-dist 6 when I was aligning the sequence. I am not sure whether I have to mention --read-gap-length also or not?
Please provide your suggestions.
Thank you
I am using tophat for an alignment. I would like to know how -N option and the other two options --read-gap-length and --read-edit-dist are related.
I gave -N 6 --read-edit-dist 6 when I was aligning the sequence. I am not sure whether I have to mention --read-gap-length also or not?
Please provide your suggestions.
Thank you