Hi All
We recently have run cancer samples on Illumina. As this is our first such run, I wanted to know the tools out there to process/analyze the cancer NGS data.
We want to compare the data from the cancerous and non-cancerous cell lines and also would be nice to show some differences in genotype and/or expression levels.
Any paper/software that you could point me to will help.
Thanks,
-Abhi
We recently have run cancer samples on Illumina. As this is our first such run, I wanted to know the tools out there to process/analyze the cancer NGS data.
We want to compare the data from the cancerous and non-cancerous cell lines and also would be nice to show some differences in genotype and/or expression levels.
Any paper/software that you could point me to will help.
Thanks,
-Abhi
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