Hi all,
I am working with 50-bases-length Solid RNA-seq data. I want to do both genotyping and RNA quantification. I am currently hesitating between SHRiMP and BFAST to perform the alignments. Both seems to me equivalent in term of mapping strategy. Does someone who experienced these two aligners can give me his opinion ?
best,
Mathieu
I am working with 50-bases-length Solid RNA-seq data. I want to do both genotyping and RNA quantification. I am currently hesitating between SHRiMP and BFAST to perform the alignments. Both seems to me equivalent in term of mapping strategy. Does someone who experienced these two aligners can give me his opinion ?
best,
Mathieu
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