Hi, All
I have a cell mix sample: 30 cells A + 80 cells B. I used Illuima GA to sequence this sample, and then used BWA to do mapping and SAMtools to call SNPs. Now, I want to find how many copies a certain gene has in these two cell lines (i.e., A and B).
Anyone knows a good way to find out the copy number?
I'll appreciate all your help.
-Cliff
I have a cell mix sample: 30 cells A + 80 cells B. I used Illuima GA to sequence this sample, and then used BWA to do mapping and SAMtools to call SNPs. Now, I want to find how many copies a certain gene has in these two cell lines (i.e., A and B).
Anyone knows a good way to find out the copy number?
I'll appreciate all your help.
-Cliff
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