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Old 03-16-2018, 07:58 AM   #1
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Location: Eibar

Join Date: Mar 2018
Posts: 1
Default Extract the coordinates of the gaps between peaks.

Hi everybody, i'm new in SeQanswers.
I have some sequencing data from GEO repository it is written like this:

chr1 1 2001 int
chr1 1001 3001 int
chr1 2001 4001 int
chr1 3001 5001 int
chr1 4001 6001 int

I would like to extract the gap coordinates that are not written, as:

chr1 1 1001
chr1 1001 2001
chr1 2001 3001
chr1 3001 4001

Is it posible in command line?
iramai is offline   Reply With Quote

bed file, gaps, peaks

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