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01-07-2013, 04:09 AM
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Junior Member
Location: Switzerland Join Date: May 2012
Posts: 5
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Structural variation using paired-end reads
I have resequenced a bacterial genome using paired-end SOLiD reads (75+35 bp).
Which software is recommended to detect large insertions / deletions (and may be other structural variations) which makes use of the paired-end data? I tried using LifeScope's LargeIndel detection tool, but apparently it's not very useful for prokaryotic genomes. Along the same lines: which software would you use if you had Illumina data? Does Illumina have a standard software package to solve such a task? |
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| indel, paired end reads, structural variation |
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