Hi,
I am using Pathview for visualization. But I got the following error
> cnts.dt[,1:3]
K01733 K00615 K08832
[1,] -0.04457192 -0.4192945 -1.1595308
[2,] -0.71249489 -0.9496913 -0.7381559
[3,] -0.01979384 -0.5146385 -0.2218313
> pathview(gene.data = cnts.dt, pathway.id = "01110", kegg.native = T,same.layer = F,species = "ko")
Note: Only KEGG ortholog gene ID is supported, make sure it looks like "K01488"!
Start tag expected, '<' not found
Warning: Parsing ./ko01110.xml file failed, please check the file!
Any thoughts would be appreciated!
Dawn
I am using Pathview for visualization. But I got the following error
> cnts.dt[,1:3]
K01733 K00615 K08832
[1,] -0.04457192 -0.4192945 -1.1595308
[2,] -0.71249489 -0.9496913 -0.7381559
[3,] -0.01979384 -0.5146385 -0.2218313
> pathview(gene.data = cnts.dt, pathway.id = "01110", kegg.native = T,same.layer = F,species = "ko")
Note: Only KEGG ortholog gene ID is supported, make sure it looks like "K01488"!
Start tag expected, '<' not found
Warning: Parsing ./ko01110.xml file failed, please check the file!
Any thoughts would be appreciated!
Dawn
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