Hi all,
We need the "QUAL" of invariant sites (homogeneous reference sites) from GATK. Can we just plug "0" into the formula -10 log_10 Prob (0 variant) since ALT is "."?
We need the "QUAL" of invariant sites (homogeneous reference sites) from GATK. Can we just plug "0" into the formula -10 log_10 Prob (0 variant) since ALT is "."?