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  • Prokaryotic gene prediction software

    Hello SEQanswers community,
    I am looking for an open source software, which can assemble and annotate a prokaryotic "short reads" coming out of various sequencing set up and the software licensing should allow us to integrate it in web-services provided by us.

    Please help me in searching this kind of software, if available?
    Do I need separate software for assembly and annotation?

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