I converted a binary out.map file after a maq alignment to .txt and filtered for unreliable data. Attempting to do a maq pileup on the cleaned data, but pileup requires a .map file.
How do you get a .txt file back into a .map (binary) to do the ./maq pileup or is there a way to do pileup with .txt file?
L
How do you get a .txt file back into a .map (binary) to do the ./maq pileup or is there a way to do pileup with .txt file?
L
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