Hi users,
sorry for a simple question but I am a bit confused about the differences or similarities between BWA, SAMtools and MAQ, how do they relate? Is MAQ not in use anymore? Is it better to use BWA or SAMtools as they are more updated? Can I use any of them to do indel analysis?
your help is greatly appreciated
sorry for a simple question but I am a bit confused about the differences or similarities between BWA, SAMtools and MAQ, how do they relate? Is MAQ not in use anymore? Is it better to use BWA or SAMtools as they are more updated? Can I use any of them to do indel analysis?
your help is greatly appreciated