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  • Happy Coding!

    Good Morning All,

    This is Jacob Green checking in from the University of Rhode Island. I am a California native and recent BS grad in Molecular Biology with a chemistry minor from California State University Monterey Bay. I got my introduction into bioinformatics through the Logan/Jue lab where we work on applying genomic and transcriptomics to figure out how animals are adapting, dying, or thriving in the face of climate change. Currently, I am on a fellowship in the Puritz lab at URI where we leverage Next-Generation sequencing with novel Bioinformatics techniques to answer questions regarding population connectivity, selection, and seascape genetics. Right now I am working on an Exome sequencing set of data from larval oysters exposed to heat stress. We are using a slew of programs including but not limited to: Trinity, Oases, Transabyss, Itero, BinPacker, Spades, and others to build a robust transcriptome. I am super interested in digging deep into the decision-making process by defining parameters, side-skirting statisical bias in assembly programs, how kmers and coverage change assembly statistics, and what is the best de novo assembler?! I am new to this world of coding and sequencing but quickly have fallen in love over the past 4 years. Hope your day is lovely. I am excited to be apart of this community.

    Best Fishes,

    Jacob Michael Green

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  • seqadmin
    Techniques and Challenges in Conservation Genomics
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    The field of conservation genomics centers on applying genomics technologies in support of conservation efforts and the preservation of biodiversity. This article features interviews with two researchers who showcase their innovative work and highlight the current state and future of conservation genomics.

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  • seqadmin
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    Artificial intelligence (AI) has evolved from a futuristic vision to a mainstream technology, highlighted by the introduction of tools like OpenAI's ChatGPT and Google's Gemini. In recent years, AI has become increasingly integrated into the field of genomics. This integration has enabled new scientific discoveries while simultaneously raising important ethical questions1. Interviews with two researchers at the center of this intersection provide insightful perspectives into...
    02-26-2024, 02:07 PM

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