Hello
I am trying to understand reading SNPs in relation to Alleles. I've used Samtools to generate the list of SNPs, but given there are 2 alleles I am thinking the result represents just a variant in one Allele?
What would display if the same SNP was present in both Alleles?
Thankyou in advance for any help you can provide.
I am trying to understand reading SNPs in relation to Alleles. I've used Samtools to generate the list of SNPs, but given there are 2 alleles I am thinking the result represents just a variant in one Allele?
What would display if the same SNP was present in both Alleles?
Thankyou in advance for any help you can provide.
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