I am using ANNOVAR to annotate variants called last night. I am pretty much new to Bioinformatics, Biology..so please bear in mind
Could anyone explain specific things in my annovar output?
1. If there is a just blank in a 1000G filter column, what does it mean?
Do I need to consider these genes for prioritization?
2. What do they mean, such as
./., 0/0, 0/1, 1/1, 1/2, 2/2?
3. If there is a blank or 'unknown' in Exonic function, do I need to consider these for possible genes that I will be interested? or just care about non-synonymous ?
Sorry, it is really really basic, but I am just trying to learn these by myself. Can anyone help me?
Could anyone explain specific things in my annovar output?
1. If there is a just blank in a 1000G filter column, what does it mean?
Do I need to consider these genes for prioritization?
2. What do they mean, such as
./., 0/0, 0/1, 1/1, 1/2, 2/2?
3. If there is a blank or 'unknown' in Exonic function, do I need to consider these for possible genes that I will be interested? or just care about non-synonymous ?
Sorry, it is really really basic, but I am just trying to learn these by myself. Can anyone help me?
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