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Old 04-06-2018, 07:48 AM   #1
cascoamarillo
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Location: MA

Join Date: Oct 2010
Posts: 158
Default Process SMRT seq kinetic with AgIn

Hi all,

I have a problem with the installation/execution of this program, which process SMRT sequencing kinetic .csv files to predict regional methylation

https://github.com/hacone/AgIn

In theory it seems simple, but don't know what I am doing wrong. A similar issue was addressed in this #4:

https://github.com/hacone/AgIn/issues/4

But it's not working for me either. The author doesn't look to be active lately. Personally, I think there had been some kind of modification in their original commands. This is what I get so far:

Code:
$ ./sbt package-dist 
OpenJDK 64-Bit Server VM warning: ignoring option MaxPermSize=384M; support was removed in 8.0 [info] Set current project to default-52c6fe (in build file:/home/user/AgIn/bin/) [error] Not a valid command: package-dist [error] Not a valid project ID: package-dist [error] Expected ':' [error] Not a valid key: package-dist (similar: package-bin, package-src, package-doc) [error] package-dist [error] ^
Then, looking for similar syntax:

Code:
$ ./sbt
OpenJDK 64-Bit Server VM warning: ignoring option MaxPermSize=384M; support was removed in 8.0
[info] Set current project to default-52c6fe (in build file:/home/user/AgIn/bin/)

Display all 243 possibilities? (y or n)
package
package-bin package-doc package-src
packaged-artifacts`
No idea what's wrong. I have also left a comment on issue #11

https://github.com/hacone/AgIn/issues/11

Thanks

Last edited by cascoamarillo; 04-06-2018 at 02:28 PM.
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