Seqanswers Leaderboard Ad

Collapse

Announcement

Collapse
No announcement yet.
X
 
  • Filter
  • Time
  • Show
Clear All
new posts

  • what tools could plot a picture like this

    Dear everyone,

    I want to know how this kind picture is plotted, could you help me? Just mark the target regions on each chromosome.

    thank you.
    Attached Files

  • #2
    It is most likely plotted by PERL GD module. R, gnuplot, python mathplotlib also can do it.

    Comment


    • #3
      You could make something pretty similar in seqmonk. The genome view window can plot out sets of positions and export them as SVG.

      This screenshot shows something similar, but not exactly the same.

      Comment


      • #4
        get it, thank you.

        Originally posted by BENM View Post
        It is most likely plotted by PERL GD module. R, gnuplot, python mathplotlib also can do it.
        get it, thank you.

        Comment


        • #5
          this tool is very good, thank you very much.

          Originally posted by simonandrews View Post
          You could make something pretty similar in seqmonk. The genome view window can plot out sets of positions and export them as SVG.

          This screenshot shows something similar, but not exactly the same.
          this tool is very good, thank you very much.

          Comment

          Latest Articles

          Collapse

          • seqadmin
            Strategies for Sequencing Challenging Samples
            by seqadmin


            Despite advancements in sequencing platforms and related sample preparation technologies, certain sample types continue to present significant challenges that can compromise sequencing results. Pedro Echave, Senior Manager of the Global Business Segment at Revvity, explained that the success of a sequencing experiment ultimately depends on the amount and integrity of the nucleic acid template (RNA or DNA) obtained from a sample. “The better the quality of the nucleic acid isolated...
            03-22-2024, 06:39 AM
          • seqadmin
            Techniques and Challenges in Conservation Genomics
            by seqadmin



            The field of conservation genomics centers on applying genomics technologies in support of conservation efforts and the preservation of biodiversity. This article features interviews with two researchers who showcase their innovative work and highlight the current state and future of conservation genomics.

            Avian Conservation
            Matthew DeSaix, a recent doctoral graduate from Kristen Ruegg’s lab at The University of Colorado, shared that most of his research...
            03-08-2024, 10:41 AM

          ad_right_rmr

          Collapse

          News

          Collapse

          Topics Statistics Last Post
          Started by seqadmin, Yesterday, 06:37 PM
          0 responses
          11 views
          0 likes
          Last Post seqadmin  
          Started by seqadmin, Yesterday, 06:07 PM
          0 responses
          10 views
          0 likes
          Last Post seqadmin  
          Started by seqadmin, 03-22-2024, 10:03 AM
          0 responses
          51 views
          0 likes
          Last Post seqadmin  
          Started by seqadmin, 03-21-2024, 07:32 AM
          0 responses
          68 views
          0 likes
          Last Post seqadmin  
          Working...
          X