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Old 11-15-2011, 11:21 PM   #1
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Default Align primer against NGS contigs?

i got my NGS data in contigs. i have few sets of primer that amplify certain gene. i would like to align the primer to the contigs to get the DNA sequence of the gene. is there any software can do so?
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Old 11-16-2011, 01:09 AM   #2
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In Biopieces ( there is pcr_seq:
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Old 11-16-2011, 04:16 AM   #3
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most short read mapper will do that accurately and efficiently
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Old 11-20-2011, 10:01 PM   #4
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