Hello there:
Under windows 7, I am trying to align reads by Bowtie like this
bowtie -t hg19 -S -p4 -m 1 -q XXXXXX.fastq > XXXXXX.sam
And after the alignment, the screen showed:
Time loading forward index: 00:00:15
Time loading mirror index: 00:00:14
Seeded quality full-index search: 01:26:49
# reads processed: 37763608
# reads with at least one reported alignment: 26849716 (71.10%)
# reads that failed to align: 3594644 (9.52%)
# reads with alignments suppressed due to -m: 7319248 (19.38%)
Reported 26849716 alignments to 1 output stream(s)
Time searching: 01:27:18
Overall time: 01:27:18
Is there a way to store the above log? I saw tophat got logs, but I cannot find any log file after the alignment.
Thanks!
Under windows 7, I am trying to align reads by Bowtie like this
bowtie -t hg19 -S -p4 -m 1 -q XXXXXX.fastq > XXXXXX.sam
And after the alignment, the screen showed:
Time loading forward index: 00:00:15
Time loading mirror index: 00:00:14
Seeded quality full-index search: 01:26:49
# reads processed: 37763608
# reads with at least one reported alignment: 26849716 (71.10%)
# reads that failed to align: 3594644 (9.52%)
# reads with alignments suppressed due to -m: 7319248 (19.38%)
Reported 26849716 alignments to 1 output stream(s)
Time searching: 01:27:18
Overall time: 01:27:18
Is there a way to store the above log? I saw tophat got logs, but I cannot find any log file after the alignment.
Thanks!
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