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  • Can anyone recommend a software for finding DMRs in Chipseq?

    We have a dataset of aligned and normalized data (originally from chipseq methylation) and we'd like to find DMRs.

    I thought of USeq, though our data are already normalized so I'm not sure where to start from there

  • #2
    Is it bisulfite data? If yes, you may use moabs.

    Originally posted by KYR View Post
    We have a dataset of aligned and normalized data (originally from chipseq methylation) and we'd like to find DMRs.

    I thought of USeq, though our data are already normalized so I'm not sure where to start from there

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