Hi,
I've mostly worked on Illumina data and have all my SNP calling scripts tuned to data from that platform.
I have recently received some 454 data and am wondering what is an appropriate minimum coverage cutoff to call a SNP at a given position.
Any help would be much appreciated.
Cheers
Paul
I've mostly worked on Illumina data and have all my SNP calling scripts tuned to data from that platform.
I have recently received some 454 data and am wondering what is an appropriate minimum coverage cutoff to call a SNP at a given position.
Any help would be much appreciated.
Cheers
Paul