everytime I try to run this command, i got this error :
so that I follow this instruction and download ngs-sdk.1.3.0-linux.tar.gz
After extract and follow the instruction of this ngs-sdk.1.3.0-linux.tar.gz, I got this message :
Did I make something wrong? please advice, thank you so much
Code:
$ hisat2 -p 8 --dta -x chrX_data/indexes/chrX_tran --sra-acc ERR188245 –S ERR188245_chrX.sam hisat2-align-s: unrecognized option '--sra-acc'
Code:
"For the support of SRA data access in HISAT2, please download and install the NCBI-NGS toolkit."
HTML Code:
http://ftp-trace.ncbi.nlm.nih.gov/sra/ngs/1.3.0/ngs-sdk.1.3.0-linux.tar.gz
Code:
~/RNAseq/tools/ngs-sdk.1.3.0-linux$ cd share ~/RNAseq/tools/ngs-sdk.1.3.0-linux/share$ make make: uname: Command not found make: true: Command not found /home/atonidas/RNAseq/tools/ngs-sdk.1.3.0-linux/share/Makefile.config:53: recipe for target 'ncbi-headers' failed make: *** [ncbi-headers] Error 127
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