Hi guys,
As I have some RNA-seq data, and have already run the TopHat-cufflinks to get the transcripts.gtf file, then how do I identify the already annotated lncRNAs from the gtf file?
Besides, I've two groups of data, one is control and the other one is gene knock down group, can I perform DE analysis of lncRNAs after identified them?
I'm new to lncRNAs, do u guys have any suggestions?
As I have some RNA-seq data, and have already run the TopHat-cufflinks to get the transcripts.gtf file, then how do I identify the already annotated lncRNAs from the gtf file?
Besides, I've two groups of data, one is control and the other one is gene knock down group, can I perform DE analysis of lncRNAs after identified them?
I'm new to lncRNAs, do u guys have any suggestions?
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